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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12805022_12805685_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12805022 - 12805685

Intron Length:

664

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGCGG

5'SS Class:

strong_major

3'SS Sequence:

TGTGTTTCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCCAT

U12 Branch Point Sequence:

TGTGTTTCCACA

Flanking Amino Acid:

THVEEGGSAHRDGRLTVGDE

Intron Amino Acid Position:

184

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

60.4

45.8

Major BPS

59.7

0.24

1.3

68.6

38.9

Major PPT

78.2

0.64

0.9

72.5

37.8

Minor 5ss

24.7

-2.9

29.5

43.3

Minor BPS

45.4

-0.3

59.24

41.1

Associated Gene:

Gene:

PDZD2

Ensembl Gene ID:

ENSAPLG00000012765

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025228

12722546 - 12858448

135903

ENSAPLT00000045519

12715491 - 12856516

141026

ENSAPLT00000018563

12786221 - 12856516

70296

ENSAPLT00000043159

12698817 - 12856516

157700

ENSAPLT00000018360

12706722 - 12856516

149795

ENSAPLT00000036750

12744380 - 12856516

112137

ENSAPLT00000013295

12768614 - 12856516

87903

ENSAPLT00000028669

12744380 - 12858448

114069

ENSAPLT00000047448

12706722 - 12856516

149795