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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12805819_12807779_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12805819 - 12807779

Intron Length:

1961

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGGTCA

5'SS Class:

strong_major

3'SS Sequence:

GTCTCTCGGGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATAAC

U12 Branch Point Sequence:

TGTGATATAACA

Flanking Amino Acid:

GLVQLVVASKESAEGDFLKY

Intron Amino Acid Position:

229

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.72

69.5

37.7

Major BPS

69.1

0.48

32.1

Major PPT

60.5

0.24

38.5

Minor 5ss

35.9

-1.6

3.4

47.9

47.7

Minor BPS

49.5

-0

1.9

66.03

40.1

Associated Gene:

Gene:

PDZD2

Ensembl Gene ID:

ENSAPLG00000012765

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025228

12722546 - 12858448

135903

ENSAPLT00000045519

12715491 - 12856516

141026

ENSAPLT00000018563

12786221 - 12856516

70296

ENSAPLT00000043159

12698817 - 12856516

157700

ENSAPLT00000018360

12706722 - 12856516

149795

ENSAPLT00000036750

12744380 - 12856516

112137

ENSAPLT00000013295

12768614 - 12856516

87903

ENSAPLT00000028669

12744380 - 12858448

114069

ENSAPLT00000047448

12706722 - 12856516

149795