Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12822526 - 12823048

Intron Length:

523

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TGCTGTTTGCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GACTGAC

U12 Branch Point Sequence:

AGCGACTGACTT

Flanking Amino Acid:

QQLESAGARQDYHIVKKSTR

Intron Amino Acid Position:

372

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

71.1

34.7

Major BPS

55.9

0.15

1.2

Major PPT

67.2

0.39

61.4

44.6

Minor 5ss

26.1

-2.7

3.2

42.6

Minor BPS

41.6

-0.5

1.8

52.67

42.4

Associated Gene:

Gene:

PDZD2

Ensembl Gene ID:

ENSAPLG00000012765

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025228

12722546 - 12858448

135903

ENSAPLT00000043159

12698817 - 12856516

157700

ENSAPLT00000018563

12786221 - 12856516

70296

ENSAPLT00000036750

12744380 - 12856516

112137

ENSAPLT00000018360

12706722 - 12856516

149795

ENSAPLT00000034791

12722546 - 12858448

135903

ENSAPLT00000047448

12706722 - 12856516

149795

ENSAPLT00000013295

12768614 - 12856516

87903

ENSAPLT00000028669

12744380 - 12858448

114069

ENSAPLT00000045519

12715491 - 12856516

141026

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12822526_12823048_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: