Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12823169 - 12825661

Intron Length:

2493

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCATT

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTTCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTGCAA

U12 Branch Point Sequence:

AGCTGTGCAACT

Flanking Amino Acid:

NIVLMKGQGKGLGFSIVGGQ

Intron Amino Acid Position:

412

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.9

0.92

0.8

86.9

30.1

Major BPS

50.7

0.02

1.5

63.4

44.3

Major PPT

93.1

0.97

0.6

92.3

Minor 5ss

39.9

-1.1

3.1

56.9

47.4

Minor BPS

-0.6

2.4

58.72

44.7

Associated Gene:

Gene:

PDZD2

Ensembl Gene ID:

ENSAPLG00000012765

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018563

12786221 - 12856516

70296

ENSAPLT00000036750

12744380 - 12856516

112137

ENSAPLT00000018360

12706722 - 12856516

149795

ENSAPLT00000034791

12722546 - 12858448

135903

ENSAPLT00000047448

12706722 - 12856516

149795

ENSAPLT00000013295

12768614 - 12856516

87903

ENSAPLT00000028669

12744380 - 12858448

114069

ENSAPLT00000045519

12715491 - 12856516

141026

ENSAPLT00000025228

12722546 - 12858448

135903

ENSAPLT00000043159

12698817 - 12856516

157700

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12823169_12825661_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: