Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12825777 - 12827489

Intron Length:

1713

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACAGCAG

5'SS Class:

major

3'SS Sequence:

ATCTTATTACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTTAT

U12 Branch Point Sequence:

TTTTTTGTATCT

Flanking Amino Acid:

AAAADGRLKEGDEILEVNGE

Intron Amino Acid Position:

450

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.2

0.43

1.1

44.7

Major BPS

82.6

0.81

0.8

71.7

Major PPT

74.3

0.55

67.3

42.2

Minor 5ss

28.4

-2.5

3.5

37.7

47.1

Minor BPS

54.7

0.23

2.2

82.72

39.3

Associated Gene:

Gene:

PDZD2

Ensembl Gene ID:

ENSAPLG00000012765

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018563

12786221 - 12856516

70296

ENSAPLT00000036750

12744380 - 12856516

112137

ENSAPLT00000018360

12706722 - 12856516

149795

ENSAPLT00000034791

12722546 - 12858448

135903

ENSAPLT00000047448

12706722 - 12856516

149795

ENSAPLT00000013295

12768614 - 12856516

87903

ENSAPLT00000028669

12744380 - 12858448

114069

ENSAPLT00000045519

12715491 - 12856516

141026

ENSAPLT00000025228

12722546 - 12858448

135903

ENSAPLT00000043159

12698817 - 12856516

157700

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12825777_12827489_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: