Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12827564 - 12827715

Intron Length:

152

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGCATGC

5'SS Class:

major

3'SS Sequence:

GGTGTCTGTCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

GTCACCTTACTG

Flanking Amino Acid:

THQEAIQRFKQLKKGVVTLT

Intron Amino Acid Position:

475

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.6

0.39

1.2

57.8

42.7

Major BPS

100

1.24

0.5

100

Major PPT

63.5

0.3

54.6

45.8

Minor 5ss

42.4

-0.8

3.2

59.5

45.2

Minor BPS

52.8

-0

1.8

56.54

45.1

Associated Gene:

Gene:

PDZD2

Ensembl Gene ID:

ENSAPLG00000012765

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025228

12722546 - 12858448

135903

ENSAPLT00000043159

12698817 - 12856516

157700

ENSAPLT00000018563

12786221 - 12856516

70296

ENSAPLT00000036750

12744380 - 12856516

112137

ENSAPLT00000018360

12706722 - 12856516

149795

ENSAPLT00000034791

12722546 - 12858448

135903

ENSAPLT00000047448

12706722 - 12856516

149795

ENSAPLT00000013295

12768614 - 12856516

87903

ENSAPLT00000028669

12744380 - 12858448

114069

ENSAPLT00000045519

12715491 - 12856516

141026

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12827564_12827715_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: