Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12827942 - 12828764

Intron Length:

823

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGATC

5'SS Class:

strong_major

3'SS Sequence:

TTGTTTCTCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATAACAA

U12 Branch Point Sequence:

TCTCTTTGTACT

Flanking Amino Acid:

RIVMDVTLNKEPGVGLGIGA

Intron Amino Acid Position:

550

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.9

0.89

0.8

82.1

Major BPS

0.08

61.4

34.3

Major PPT

84.7

0.78

0.8

80.1

Minor 5ss

31.4

-2.1

3.2

42.1

Minor BPS

48.8

-0

1.8

69.43

41.5

Associated Gene:

Gene:

PDZD2

Ensembl Gene ID:

ENSAPLG00000012765

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025228

12722546 - 12858448

135903

ENSAPLT00000043159

12698817 - 12856516

157700

ENSAPLT00000018563

12786221 - 12856516

70296

ENSAPLT00000036750

12744380 - 12856516

112137

ENSAPLT00000018360

12706722 - 12856516

149795

ENSAPLT00000034791

12722546 - 12858448

135903

ENSAPLT00000047448

12706722 - 12856516

149795

ENSAPLT00000013295

12768614 - 12856516

87903

ENSAPLT00000028669

12744380 - 12858448

114069

ENSAPLT00000045519

12715491 - 12856516

141026

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12827942_12828764_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: