Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12831003 - 12833928

Intron Length:

2926

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGAGA

5'SS Class:

strong_major

3'SS Sequence:

CACTCAACTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTAAT

U12 Branch Point Sequence:

TTGCACTCAACT

Flanking Amino Acid:

LIISRHPNPKVSEQEMDEAI

Intron Amino Acid Position:

634

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.7

0.84

0.9

74.8

Major BPS

81.8

0.79

1.1

34.5

Major PPT

64.2

0.32

0.9

35.3

Minor 5ss

26.2

-2.7

2.9

30.9

42.7

Minor BPS

60.3

0.4

1.8

79.29

42.2

Associated Gene:

Gene:

PDZD2

Ensembl Gene ID:

ENSAPLG00000012765

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018563

12786221 - 12856516

70296

ENSAPLT00000036750

12744380 - 12856516

112137

ENSAPLT00000018360

12706722 - 12856516

149795

ENSAPLT00000034791

12722546 - 12858448

135903

ENSAPLT00000047448

12706722 - 12856516

149795

ENSAPLT00000013295

12768614 - 12856516

87903

ENSAPLT00000028669

12744380 - 12858448

114069

ENSAPLT00000045519

12715491 - 12856516

141026

ENSAPLT00000025228

12722546 - 12858448

135903

ENSAPLT00000043159

12698817 - 12856516

157700

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12831003_12833928_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: