Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12834011 - 12834998

Intron Length:

988

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGTAGCA

5'SS Class:

major

3'SS Sequence:

CTGCGTCCAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTAAA

U12 Branch Point Sequence:

ACTAACTAAACT

Flanking Amino Acid:

SKDTSSSHVTGAVQKSPSPG

Intron Amino Acid Position:

661

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.1

0.38

1.1

57.6

35.3

Major BPS

68.7

0.47

0.9

67.9

Major PPT

64.4

0.33

58.3

37.3

Minor 5ss

23.9

-3

3.3

30.4

42.8

Minor BPS

53.3

0.18

1.9

72.16

44.3

Associated Gene:

Gene:

PDZD2

Ensembl Gene ID:

ENSAPLG00000012765

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018563

12786221 - 12856516

70296

ENSAPLT00000036750

12744380 - 12856516

112137

ENSAPLT00000018360

12706722 - 12856516

149795

ENSAPLT00000034791

12722546 - 12858448

135903

ENSAPLT00000047448

12706722 - 12856516

149795

ENSAPLT00000013295

12768614 - 12856516

87903

ENSAPLT00000028669

12744380 - 12858448

114069

ENSAPLT00000045519

12715491 - 12856516

141026

ENSAPLT00000025228

12722546 - 12858448

135903

ENSAPLT00000043159

12698817 - 12856516

157700

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12834011_12834998_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: