Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12835103_12835881_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12835103 - 12835881

Intron Length:

779

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAAAGGA

5'SS Class:

major

3'SS Sequence:

CGCTTTTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAAGCAT

U12 Branch Point Sequence:

TTGTCAGTGACT

Flanking Amino Acid:

MKRFLEPASRQGSVSSEAEL

Intron Amino Acid Position:

696

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.8

0.49

1.1

59.4

Major BPS

55.5

0.14

1.4

40.9

Major PPT

85.6

0.8

83.6

31.4

Minor 5ss

28.7

-2.4

3.3

29.7

43.1

Minor BPS

53.2

0.18

2.3

80.28

41.8

Associated Gene:

Gene:

PDZD2

Ensembl Gene ID:

ENSAPLG00000012765

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043159

12698817 - 12856516

157700

ENSAPLT00000013295

12768614 - 12856516

87903