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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12835103_12835884_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12835103 - 12835884
Intron Length:
782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAAAGGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTCAGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAG
U12 Branch Point Sequence:
TTGTCAGTGACT
Flanking Amino Acid:
MKRFLEPASRGSVSSEAELS
Intron Amino Acid Position:
862

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
59.4
40
Major BPS
60.9
0.27
1.7
71.4
45.1
Major PPT
87.9
0.85
0.8
86.1
26.7
Minor 5ss
28.7
-2.4
3.3
29.7
43.1
Minor BPS
53.2
0.18
2.3
80.28
41.8

Associated Gene:

Gene:
PDZD2
Ensembl Gene ID:
ENSAPLG00000012765
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018563
12786221 - 12856516
70296
ENSAPLT00000036750
12744380 - 12856516
112137
ENSAPLT00000018360
12706722 - 12856516
149795
ENSAPLT00000034791
12722546 - 12858448
135903
ENSAPLT00000028669
12744380 - 12858448
114069
ENSAPLT00000047448
12706722 - 12856516
149795
ENSAPLT00000025228
12722546 - 12858448
135903
ENSAPLT00000045519
12715491 - 12856516
141026