Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12836051 - 12837210

Intron Length:

1160

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGA|GTAAGCGAC

5'SS Class:

major

3'SS Sequence:

TTTTTTTTCCTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

TATAATGTAACT

Flanking Amino Acid:

DDGSLLPGNLTAREAGLAKA

Intron Amino Acid Position:

752

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.2

0.45

1.1

60.4

39.3

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

89.6

0.89

0.6

84.8

Minor 5ss

37.9

-1.4

3.4

46.3

43.5

Minor BPS

49.6

0.05

2.2

74.92

41.5

Associated Gene:

Gene:

PDZD2

Ensembl Gene ID:

ENSAPLG00000012765

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013295

12768614 - 12856516

87903

ENSAPLT00000028669

12744380 - 12858448

114069

ENSAPLT00000045519

12715491 - 12856516

141026

ENSAPLT00000025228

12722546 - 12858448

135903

ENSAPLT00000043159

12698817 - 12856516

157700

ENSAPLT00000018563

12786221 - 12856516

70296

ENSAPLT00000036750

12744380 - 12856516

112137

ENSAPLT00000018360

12706722 - 12856516

149795

ENSAPLT00000034791