About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12838002_12839190_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12838002 - 12839190
Intron Length:
1189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATTTTT
5'SS Class:
major
3'SS Sequence:
GTCATTGTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATAAATT
Flanking Amino Acid:
GLRPGGAAERGSMGKMAVGD
Intron Amino Acid Position:
1016

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
80.7
34.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
63.9
0.31
1
62.7
43
Minor 5ss
45.8
-0.4
2.8
59.1
45.4
Minor BPS
56.5
0.28
1.9
77.76
38.8

Associated Gene:

Gene:
PDZD2
Ensembl Gene ID:
ENSAPLG00000012765
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028669
12744380 - 12858448
114069
ENSAPLT00000045519
12715491 - 12856516
141026
ENSAPLT00000013295
12768614 - 12856516
87903
ENSAPLT00000025228
12722546 - 12858448
135903
ENSAPLT00000043159
12698817 - 12856516
157700
ENSAPLT00000018563
12786221 - 12856516
70296
ENSAPLT00000036750
12744380 - 12856516
112137
ENSAPLT00000034791
12722546 - 12858448
135903
ENSAPLT00000047448
12706722 - 12856516
149795
ENSAPLT00000018360
12706722 - 12856516
149795