Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12839336 - 12841349

Intron Length:

2014

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAGAA

5'SS Class:

strong_major

3'SS Sequence:

AATTGTGATGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTTAATT

Flanking Amino Acid:

VTLEIQKTAAAVSRFTNLIL

Intron Amino Acid Position:

1064

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

80.4

26.8

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

66.2

0.37

1.1

59.1

45.6

Minor 5ss

29.7

-2.3

3.3

37.8

Minor BPS

84.9

1.17

0.8

94.97

24.6

Associated Gene:

Gene:

PDZD2

Ensembl Gene ID:

ENSAPLG00000012765

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025228

12722546 - 12858448

135903

ENSAPLT00000043159

12698817 - 12856516

157700

ENSAPLT00000018563

12786221 - 12856516

70296

ENSAPLT00000036750

12744380 - 12856516

112137

ENSAPLT00000018360

12706722 - 12856516

149795

ENSAPLT00000034791

12722546 - 12858448

135903

ENSAPLT00000047448

12706722 - 12856516

149795

ENSAPLT00000013295

12768614 - 12856516

87903

ENSAPLT00000028669

12744380 - 12858448

114069

ENSAPLT00000045519

12715491 - 12856516

141026

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12839336_12841349_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: