Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12845697 - 12849050

Intron Length:

3354

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATAACC

5'SS Class:

strong_major

3'SS Sequence:

GTTTTTCTTCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTCAT

U12 Branch Point Sequence:

TTCTGTTCCACC

Flanking Amino Acid:

MLQDVKAQVKSKEDAYFVVL

Intron Amino Acid Position:

2292

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

74.4

33.9

Major BPS

82.3

0.8

0.9

81.8

30.8

Major PPT

84.9

0.79

0.7

77.9

36.6

Minor 5ss

34.8

-1.7

2.9

42.5

Minor BPS

45.2

-0.4

2.3

61.68

44.3

Associated Gene:

Gene:

PDZD2

Ensembl Gene ID:

ENSAPLG00000012765

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013295

12768614 - 12856516

87903

ENSAPLT00000028669

12744380 - 12858448

114069

ENSAPLT00000045519

12715491 - 12856516

141026

ENSAPLT00000025228

12722546 - 12858448

135903

ENSAPLT00000043159

12698817 - 12856516

157700

ENSAPLT00000018563

12786221 - 12856516

70296

ENSAPLT00000036750

12744380 - 12856516

112137

ENSAPLT00000018360

12706722 - 12856516

149795

ENSAPLT00000034791