Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12849153 - 12852291

Intron Length:

3139

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGTGAT

5'SS Class:

major

3'SS Sequence:

ATCCTTCTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCAAAT

U12 Branch Point Sequence:

ACATCCCTAAGT

Flanking Amino Acid:

GIDLEQKSVTVHRVFSKGVA

Intron Amino Acid Position:

2326

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.66

75.5

34.3

Major BPS

77.3

0.68

81.5

Major PPT

78.5

0.64

0.8

73.6

30.7

Minor 5ss

36.5

-1.5

3.4

54.7

43.6

Minor BPS

54.5

0.22

72.03

44.5

Associated Gene:

Gene:

PDZD2

Ensembl Gene ID:

ENSAPLG00000012765

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018360

12706722 - 12856516

149795

ENSAPLT00000034791

12722546 - 12858448

135903

ENSAPLT00000047448

12706722 - 12856516

149795

ENSAPLT00000013295

12768614 - 12856516

87903

ENSAPLT00000028669

12744380 - 12858448

114069

ENSAPLT00000045519

12715491 - 12856516

141026

ENSAPLT00000025228

12722546 - 12858448

135903

ENSAPLT00000043159

12698817 - 12856516

157700

ENSAPLT00000018563

12786221 - 12856516

70296

ENSAPLT00000036750

12744380 - 12856516

112137

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12849153_12852291_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: