Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12852563 - 12854862

Intron Length:

2300

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGATCT

5'SS Class:

strong_major

3'SS Sequence:

TATTCTGTCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATAACAA

U12 Branch Point Sequence:

TATTCTGTCACA

Flanking Amino Acid:

GKNVSMEIGTDPNLDMNDVI

Intron Amino Acid Position:

2416

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

76.9

32.4

Major BPS

0.08

61.4

34.3

Major PPT

0.63

0.9

72.2

37.5

Minor 5ss

46.7

-0.3

2.8

45.1

Minor BPS

50.3

2.4

71.96

40.5

Associated Gene:

Gene:

PDZD2

Ensembl Gene ID:

ENSAPLG00000012765

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034791

12722546 - 12858448

135903

ENSAPLT00000047448

12706722 - 12856516

149795

ENSAPLT00000018360

12706722 - 12856516

149795

ENSAPLT00000028669

12744380 - 12858448

114069

ENSAPLT00000045519

12715491 - 12856516

141026

ENSAPLT00000013295

12768614 - 12856516

87903

ENSAPLT00000025228

12722546 - 12858448

135903

ENSAPLT00000043159

12698817 - 12856516

157700

ENSAPLT00000018563

12786221 - 12856516

70296

ENSAPLT00000036750

12744380 - 12856516

112137

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12852563_12854862_F

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: