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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12929127_12929226_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12929127 - 12929226
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTGTTATTAATT
Flanking Amino Acid:
TYREEPQDGDREVCSENKIA
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
73.7
32.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
85.3
0.79
0.7
81.2
23.9
Minor 5ss
25.2
-2.9
3.2
30.3
43.5
Minor BPS
70.1
0.71
1.5
84.51
36.4

Associated Gene:

Gene:
CCBE1
Ensembl Gene ID:
ENSAPLG00000012572
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013098
12928073 - 13020979
92907