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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13019109_13019629_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13019109 - 13019629
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
GTATTGATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
GTGGTATTGATT
Flanking Amino Acid:
PGAPGRDGSKGERGAPGPKG
Intron Amino Acid Position:
490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
73.5
0.53
1
65.8
44.1
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
48.2
-0
1.7
63.81
41.1

Associated Gene:

Gene:
CCBE1
Ensembl Gene ID:
ENSAPLG00000012572
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013098
12928073 - 13020979
92907