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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13025314_13025396_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13025314 - 13025396
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGGGA
5'SS Class:
major
3'SS Sequence:
TGTTTCCCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAG
U12 Branch Point Sequence:
CAGGCGATAACG
Flanking Amino Acid:
ADEMRGYAERLIDYAKRGDT
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
60.1
40.8
Major BPS
64.3
0.36
1.6
74
41.2
Major PPT
80.5
0.69
0.8
78
30.8
Minor 5ss
22.7
-3.1
3.2
19.9
37.9
Minor BPS
41.6
-0.7
2.3
44.91
47

Associated Gene:

Gene:
MRPL17
Ensembl Gene ID:
ENSAPLG00000030717
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031002
13025140 - 13025932
793