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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13036104_13036718_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13036104 - 13036718
Intron Length:
615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
CTTTCCTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGAAAT
U12 Branch Point Sequence:
GCTGTTTGAAAT
Flanking Amino Acid:
YLKQLDLVITFFVTILKAKG
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
75.4
34.4
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
81.7
0.71
0.7
80.9
24.3
Minor 5ss
37
-1.5
2.9
51.4
39.2
Minor BPS
47.9
-0
1.6
61.94
42.2

Associated Gene:

Gene:
ARHGEF39
Ensembl Gene ID:
ENSAPLG00000006241
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040228
13028060 - 13040907
12848
ENSAPLT00000026495
13024023 - 13036865
12843
ENSAPLT00000044273
13026197 - 13039366
13170
ENSAPLT00000006475
13027850 - 13037037
9188
ENSAPLT00000041019
13024023 - 13039706
15684
ENSAPLT00000040594
13028060 - 13037065
9006