About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13039976_13040072_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13039976 - 13040072
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TCCCCACACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
TCTTCCCCACAC
Flanking Amino Acid:
FQPLQLYGREVSEQYRCHDE
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
64.4
0.33
0.9
58.2
30.8
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
44.7
-0.4
2.2
60.69
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022133
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042842
13039607 - 13066041
26435