About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13040204_13043084_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13040204 - 13043084
Intron Length:
2881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTGGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TTCCCTTTATTT
Flanking Amino Acid:
ARPQSQCIVISGESGAGKTE
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
63.9
42.4
Major BPS
75.1
0.62
1
65.6
41
Major PPT
86.4
0.82
0.9
84.7
30.1
Minor 5ss
25.7
-2.8
3.1
32.8
42.2
Minor BPS
61.8
0.45
1.6
76.8
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022133
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042842
13039607 - 13066041
26435