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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13049553_13049986_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13049553 - 13049986
Intron Length:
434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GGGGCTCTAACC
Flanking Amino Acid:
NEQLQHFFNHHIFQLEQAAY
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
79.6
0.67
0.8
72.3
37.7
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
48.6
-0.1
1.8
56.37
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022133
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042842
13039607 - 13066041
26435