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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13050747_13051691_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13050747 - 13051691
Intron Length:
945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTACG
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TTCACAGCAAGC
Flanking Amino Acid:
GFSIIHYAGKVQYTADGFLE
Intron Amino Acid Position:
538

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
75.3
40.8
Major BPS
77.7
0.69
1
81
30.2
Major PPT
75
0.56
0.7
68.5
31.9
Minor 5ss
34.7
-1.7
2.9
42.7
44.3
Minor BPS
38.1
-0.9
2.4
52.33
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022133
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042842
13039607 - 13066041
26435