About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13054345_13054616_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13054345 - 13054616
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCACAT
5'SS Class:
major
3'SS Sequence:
TGTCTGATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TGTGTCTGATTT
Flanking Amino Acid:
GTLMPHVKAKIVPEADNKFN
Intron Amino Acid Position:
591

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.2
64.3
41.7
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
77.7
0.62
0.9
74
40.4
Minor 5ss
45.3
-0.5
3
65.1
46.1
Minor BPS
49
0
1.8
68.88
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022133
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042842
13039607 - 13066041
26435