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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13058104_13059322_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13058104 - 13059322
Intron Length:
1219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTGAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TTTCTCTGAACA
Flanking Amino Acid:
LERAAVVIQKVFRGFRCRKS
Intron Amino Acid Position:
744

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.5
33.9
Major BPS
72
0.55
1
71.8
31.4
Major PPT
76.2
0.59
1
73.4
35.8
Minor 5ss
36.6
-1.5
2.9
49.5
46.5
Minor BPS
72.2
0.69
1.4
81.77
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022133
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042842
13039607 - 13066041
26435