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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13064406_13065573_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
13064406 - 13065573
Intron Length:
1168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TGACTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TGTTTCATGACT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
67.9
37.5
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
82
0.72
0.9
76.7
37.2
Minor 5ss
29.9
-2.3
3.3
35.5
43.1
Minor BPS
67
0.62
1.6
84.8
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022133
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042842
13039607 - 13066041
26435