Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13094047_13094217_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13094047 - 13094217

Intron Length:

171

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGAACC

5'SS Class:

strong_major

3'SS Sequence:

TGCTGCATTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTGCAT

U12 Branch Point Sequence:

TGCTGCTGCATT

Flanking Amino Acid:

GLAVLGVFLEVGPRENPYYE

Intron Amino Acid Position:

197

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.4

0.88

0.8

77.7

30.1

Major BPS

47.9

-0.1

1.6

59.3

47.1

Major PPT

73.5

0.53

66.2

39.5

Minor 5ss

29.3

-2.4

2.8

35.3

40.9

Minor BPS

-0.3

2.3

65.07

45.7

Associated Gene:

Gene:

CA9

Ensembl Gene ID:

ENSAPLG00000021968

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037475

13085170 - 13096991

11822

ENSAPLT00000031396

13085170 - 13096727

11558