Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13094897_13096359_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13094897 - 13096359

Intron Length:

1463

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGGAGC

5'SS Class:

major

3'SS Sequence:

AATTTTTCCTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CCTTTTTTAATT

Flanking Amino Acid:

TLSRERQVPTAGQTSSSFHA

Intron Amino Acid Position:

319

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.7

67.8

43.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

80.1

0.68

0.8

35.5

Minor 5ss

32.2

-2

3.1

34.8

41.4

Minor BPS

71.6

0.76

1.2

78.3

39.3

Associated Gene:

Gene:

CA9

Ensembl Gene ID:

ENSAPLG00000021968

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031396

13085170 - 13096727

11558

ENSAPLT00000037475

13085170 - 13096991

11822