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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13098326_13098586_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13098326 - 13098586
Intron Length:
261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TTGGTTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGAAAAT
U12 Branch Point Sequence:
TTGGTTTCCACA
Flanking Amino Acid:
LCTEPAPLPALFAERSQPPA
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
67.9
38.9
Major BPS
55.4
0.14
1.3
61.7
41.5
Major PPT
77.8
0.63
0.9
72.5
37.8
Minor 5ss
36.9
-1.5
3.3
55
42.2
Minor BPS
44.9
-0.4
2
58.12
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030533
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027877
13097584 - 13101552
3969