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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13099440_13100236_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13099440 - 13100236
Intron Length:
797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
TTTTTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACACAT
U12 Branch Point Sequence:
CTGCTGGTGACA
Flanking Amino Acid:
AFRFLYYKLLRKAIEGLVAL
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
52.1
0.05
1.2
61
37.5
Major PPT
90.6
0.91
0.6
85.8
21.3
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
39.4
-0.8
2.5
50.39
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030533
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027877
13097584 - 13101552
3969