Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13104376_13105896_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13104376 - 13105896

Intron Length:

1521

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAAACA

5'SS Class:

strong_major

3'SS Sequence:

CCGTTTTCTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTGAC

U12 Branch Point Sequence:

CTGCGCTGACGT

Flanking Amino Acid:

KLEKTIDDLEERSRQEAEKN

Intron Amino Acid Position:

258

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

0.9

76.8

31.6

Major BPS

53.9

0.1

1.2

46.4

38.9

Major PPT

76.5

0.6

0.8

69.3

Minor 5ss

33.1

-1.9

2.9

41.4

44.7

Minor BPS

38.8

-0.7

2.2

53.53

47.6

Associated Gene:

Gene:

TPM2

Ensembl Gene ID:

ENSAPLG00000004483

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004598

13104296 - 13114226

9931