Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13105967_13106154_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13105967 - 13106154

Intron Length:

188

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGCTC

5'SS Class:

strong_major

3'SS Sequence:

TCCTCTCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCACAC

U12 Branch Point Sequence:

GCCCCCATCACA

Flanking Amino Acid:

IKLLGEKLKEAETRAEFAER

Intron Amino Acid Position:

235

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

76.9

38.6

Major BPS

0.22

66.7

Major PPT

82.3

0.73

0.7

76.8

25.2

Minor 5ss

35.3

-1.7

3.4

50.1

46.5

Minor BPS

-0.3

54.36

43.9

Associated Gene:

Gene:

TPM2

Ensembl Gene ID:

ENSAPLG00000004483

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004598

13104296 - 13114226

9931

ENSAPLT00000031494

13105473 - 13114226

8754

ENSAPLT00000012870

13103347 - 13109945

6599