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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13107402_13107811_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13107402 - 13107811
Intron Length:
410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGACGG
5'SS Class:
major
3'SS Sequence:
TGGCTTCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
ACCTCCTAATCT
Flanking Amino Acid:
EAEKAADESERGMKVIENRA
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
55.1
43.7
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
72.7
0.51
0.9
69.8
36.6
Minor 5ss
32
-2.1
3
38.8
46.3
Minor BPS
52.7
0.16
2
69.66
47.3

Associated Gene:

Gene:
TPM2
Ensembl Gene ID:
ENSAPLG00000004483
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012870
13103347 - 13109945
6599
ENSAPLT00000004598
13104296 - 13114226
9931
ENSAPLT00000031494
13105473 - 13114226
8754
ENSAPLT00000022802
13103347 - 13114226
10880