Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13107946_13113349_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13107946 - 13113349

Intron Length:

5404

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAC|GTACGTAGG

5'SS Class:

major

3'SS Sequence:

TTGTGCTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGGTGAC

U12 Branch Point Sequence:

CGGGCGGTGACC

Flanking Amino Acid:

LEQAEKKATDAEAEVASLNR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.3

0.43

1.4

63.8

47.8

Major BPS

47.5

-0.1

1.3

38.2

41.7

Major PPT

74.6

0.55

0.9

40.8

Minor 5ss

35.4

-1.7

2.9

40.9

38.8

Minor BPS

38.2

-0.9

2.5

45.41

43.9

Associated Gene:

Gene:

TPM2

Ensembl Gene ID:

ENSAPLG00000004483

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031494

13105473 - 13114226

8754

ENSAPLT00000022802

13103347 - 13114226

10880

ENSAPLT00000004598

13104296 - 13114226

9931