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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13119088_13119681_R

Intron Information:

Intron Rank:
44
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13119088 - 13119681
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTGCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAGGAT
U12 Branch Point Sequence:
GTTCCCTCACCT
Flanking Amino Acid:
HDSEAMKRLQAAGNAVKRAS
Intron Amino Acid Position:
2510

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
74.9
35.3
Major BPS
59.7
0.24
1.5
59.7
46.7
Major PPT
77.8
0.62
0.9
69.1
37
Minor 5ss
30
-2.3
2.7
36.3
40.6
Minor BPS
58.3
0.34
1.9
78.98
42.6

Associated Gene:

Gene:
TLN1
Ensembl Gene ID:
ENSAPLG00000004508
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004695
13117449 - 13139647
22199
ENSAPLT00000004681
13117449 - 13144432
26984
ENSAPLT00000004677
13118633 - 13139647
21015