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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13120402_13120489_R

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13120402 - 13120489
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGACGG
5'SS Class:
major
3'SS Sequence:
TTCTTGTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTCAC
U12 Branch Point Sequence:
TTCTTGTCCACA
Flanking Amino Acid:
EQLKPRAKPKQADESLDFEE
Intron Amino Acid Position:
2386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
57.3
47.4
Major BPS
52.1
0.05
1.3
57
41.8
Major PPT
80.9
0.7
0.8
75.8
32.8
Minor 5ss
30
-2.3
3.3
38.8
46.3
Minor BPS
43.8
-0.5
2.5
62.43
44.3

Associated Gene:

Gene:
TLN1
Ensembl Gene ID:
ENSAPLG00000004508
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004695
13117449 - 13139647
22199
ENSAPLT00000004681
13117449 - 13144432
26984
ENSAPLT00000004677
13118633 - 13139647
21015