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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13120868_13123690_R

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13120868 - 13123690
Intron Length:
2823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
GCGTGCTCAGCT
Flanking Amino Acid:
YLELLEHVLVILQKPTHELK
Intron Amino Acid Position:
2309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.8
77.5
30.7
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
80.2
0.68
0.7
72.9
32
Minor 5ss
31.9
-2.1
3.3
40.3
40.2
Minor BPS
44.9
-0.3
2.2
60.77
48.4

Associated Gene:

Gene:
TLN1
Ensembl Gene ID:
ENSAPLG00000004508
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004681
13117449 - 13144432
26984
ENSAPLT00000004677
13118633 - 13139647
21015
ENSAPLT00000004695
13117449 - 13139647
22199