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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13124109_13124186_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13124109 - 13124186
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCGCA
5'SS Class:
major
3'SS Sequence:
TCTCTCTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAC
U12 Branch Point Sequence:
CTCCCCAAAACC
Flanking Amino Acid:
TIEHIRQELAVFSSPVPPAQ
Intron Amino Acid Position:
2211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1
62.4
38.2
Major BPS
63.6
0.34
1
65.3
32.1
Major PPT
85.3
0.79
0.7
83.9
24.1
Minor 5ss
31.7
-2.1
3.3
39.6
45.9
Minor BPS
48.1
-0.1
2
60.7
44.5

Associated Gene:

Gene:
TLN1
Ensembl Gene ID:
ENSAPLG00000004508
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004677
13118633 - 13139647
21015
ENSAPLT00000004695
13117449 - 13139647
22199
ENSAPLT00000004681
13117449 - 13144432
26984