Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13124304_13124568_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13124304 - 13124568

Intron Length:

265

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCTGCACT

5'SS Class:

major

3'SS Sequence:

CTCCCTCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCCAG

U12 Branch Point Sequence:

TTTTTCCCAGTT

Flanking Amino Acid:

AVYQLKNSAKVMVTNVTSLL

Intron Amino Acid Position:

2172

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.3

0.43

1.3

42.9

Major BPS

49.3

-0

1.7

66.4

42.2

Major PPT

74.2

0.54

0.7

25.7

Minor 5ss

43.5

-0.7

2.6

59.1

45.2

Minor BPS

48.8

-0

76.67

40.2

Associated Gene:

Gene:

TLN1

Ensembl Gene ID:

ENSAPLG00000004508

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004677

13118633 - 13139647

21015

ENSAPLT00000004695

13117449 - 13139647

22199

ENSAPLT00000004681

13117449 - 13144432

26984