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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13125052_13125299_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13125052 - 13125299
Intron Length:
248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAGGG
5'SS Class:
major
3'SS Sequence:
TTCTTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
CCCTCTCTGACT
Flanking Amino Acid:
RENSETFADHREGILKTAKA
Intron Amino Acid Position:
2068

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.36
1.2
51.9
45.4
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
83.9
0.76
0.7
77
31.7
Minor 5ss
34.3
-1.8
3.5
47.6
47.8
Minor BPS
52.8
0.17
1.7
67.08
44.4

Associated Gene:

Gene:
TLN1
Ensembl Gene ID:
ENSAPLG00000004508
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004677
13118633 - 13139647
21015
ENSAPLT00000004695
13117449 - 13139647
22199
ENSAPLT00000004681
13117449 - 13144432
26984