Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13126738_13126848_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13126738 - 13126848

Intron Length:

111

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGGGTGCA

5'SS Class:

major

3'SS Sequence:

CTCCCACCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTAAA

U12 Branch Point Sequence:

CTTCTCCCACCT

Flanking Amino Acid:

KAIAVTVQEMVTKSTTNPDE

Intron Amino Acid Position:

1924

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.5

0.55

63.8

36.3

Major BPS

60.4

0.26

1.1

61.5

32.5

Major PPT

73.2

0.52

0.8

65.9

28.9

Minor 5ss

26.3

-2.7

3.2

28.7

38.5

Minor BPS

44.1

-0.3

2.1

65.92

44.5

Associated Gene:

Gene:

TLN1

Ensembl Gene ID:

ENSAPLG00000004508

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004695

13117449 - 13139647

22199

ENSAPLT00000004681

13117449 - 13144432

26984

ENSAPLT00000004677

13118633 - 13139647

21015