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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13131762_13131838_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13131762 - 13131838
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAGCC
5'SS Class:
major
3'SS Sequence:
TCCCCCCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTGAT
U12 Branch Point Sequence:
CTCTCTCTGACT
Flanking Amino Acid:
EVAQGNENYTGIAAREVAQA
Intron Amino Acid Position:
1170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.2
58.3
42
Major BPS
65.8
0.39
1.2
57.3
41.7
Major PPT
68.9
0.43
0.9
64.1
31.2
Minor 5ss
36.2
-1.6
3.5
51.7
45
Minor BPS
59
0.36
1.7
75.42
41.9

Associated Gene:

Gene:
TLN1
Ensembl Gene ID:
ENSAPLG00000004508
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004695
13117449 - 13139647
22199
ENSAPLT00000004681
13117449 - 13144432
26984
ENSAPLT00000004677
13118633 - 13139647
21015