Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13132366_13132451_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13132366 - 13132451

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCCCCA

5'SS Class:

major

3'SS Sequence:

TTTCTCTTGGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTCTCAC

U12 Branch Point Sequence:

CCCGTCTCACCC

Flanking Amino Acid:

LIAASQNFLQPGGKMVAAAK

Intron Amino Acid Position:

1048

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.3

0.34

1.3

53.6

45.3

Major BPS

67.3

0.43

1.2

71.3

36.7

Major PPT

82.8

0.74

0.9

80.7

31.3

Minor 5ss

42.6

-0.8

3.1

57.9

46.3

Minor BPS

42.6

-0.5

1.8

44.77

44.2

Associated Gene:

Gene:

TLN1

Ensembl Gene ID:

ENSAPLG00000004508

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004695

13117449 - 13139647

22199

ENSAPLT00000004681

13117449 - 13144432

26984

ENSAPLT00000004677

13118633 - 13139647

21015