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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13133461_13133584_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13133461 - 13133584
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAACCAC
U12 Branch Point Sequence:
TGACCCCGGATT
Flanking Amino Acid:
IKKKLVHKLEHAAKQAAASA
Intron Amino Acid Position:
972

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
45.7
-0.2
1.1
50.5
33.7
Major PPT
83.8
0.76
0.7
77.9
23.9
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
46.4
-0.2
1.8
64.21
39.6

Associated Gene:

Gene:
TLN1
Ensembl Gene ID:
ENSAPLG00000004508
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004695
13117449 - 13139647
22199
ENSAPLT00000004681
13117449 - 13144432
26984
ENSAPLT00000004677
13118633 - 13139647
21015