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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13133975_13134183_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13133975 - 13134183
Intron Length:
209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGAGCG
5'SS Class:
major
3'SS Sequence:
CTTTCTGTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
ACTTGCTGATGG
Flanking Amino Acid:
ENIFSSMGDAGEMVRQARIL
Intron Amino Acid Position:
873

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
59.5
39.8
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
80
0.67
0.8
72.4
37.7
Minor 5ss
24.9
-2.9
3
22.5
36.9
Minor BPS
40.5
-0.8
2.3
46.08
46.5

Associated Gene:

Gene:
TLN1
Ensembl Gene ID:
ENSAPLG00000004508
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004695
13117449 - 13139647
22199
ENSAPLT00000004681
13117449 - 13144432
26984
ENSAPLT00000004677
13118633 - 13139647
21015