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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13136429_13136522_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13136429 - 13136522
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGAGGG
5'SS Class:
major
3'SS Sequence:
TCCTTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
LKTAQPASAEPRQNLLQAAG
Intron Amino Acid Position:
669

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
57
42.4
Major BPS
100
1.24
0.5
100
0
Major PPT
85.7
0.8
0.7
80.4
24.9
Minor 5ss
23.3
-3.1
3.2
29.5
43.3
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
TLN1
Ensembl Gene ID:
ENSAPLG00000004508
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004695
13117449 - 13139647
22199
ENSAPLT00000004681
13117449 - 13144432
26984
ENSAPLT00000004677
13118633 - 13139647
21015