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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13139573_13139688_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13139573 - 13139688
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTGCA
5'SS Class:
major
3'SS Sequence:
ATTTTCGCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTGTCCTGACAT
Flanking Amino Acid:
KQKGERKIFMAHKGCGNMSE
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
67.9
37.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
80.3
0.68
0.9
74.3
35.9
Minor 5ss
32
-2.1
3.3
38.4
41.8
Minor BPS
50.3
0.09
1.9
69.93
46.5

Associated Gene:

Gene:
TLN1
Ensembl Gene ID:
ENSAPLG00000004508
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004681
13117449 - 13144432
26984