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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13140350_13140486_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13140350 - 13140486
Intron Length:
137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTACGTGCC
5'SS Class:
major
3'SS Sequence:
CCCTCGCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
CCCTGCTGATGC
Flanking Amino Acid:
LKQKLHTDDELNWLDHGRTL
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.2
60.2
39.9
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
72.2
0.5
0.8
64.8
30.8
Minor 5ss
34.9
-1.7
3.4
45
43
Minor BPS
38.2
-0.9
2.2
41.94
45.1

Associated Gene:

Gene:
TLN1
Ensembl Gene ID:
ENSAPLG00000004508
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004681
13117449 - 13144432
26984